Overview

Features

  • Uses Singularity containers for the execution of all tools.

When possible (i.e. the image is not larger than a few Gs), tools and their dependencies are bundled in the same container. This means you do not need to get models or any other external databases, unless otherwise specified.

  • Intermediate processing steps are handled by Conda environments, to ensure smooth and reproducible execution.

  • Outputs the Last Common Ancestor of all tools, per contig, based on the predicted taxonomy.